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1

methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles

Altuna Akalin, Matthias Kormaksson, Sheng Li, Francine E Garrett-Bakelman, Maria E Figueroa, Ari Melnick, Christopher E Mason

Journal:

Year:

2012

Language:

english

File:

PDF, 721 KB

english, 2012

2

The effects of Eculizumab on the pathology of malignant atrophic papulosis

Magro, Cynthia M, Wang, Xuan, Garrett-Bakelman, Francine, Laurence, Jeffrey, Shapiro, Lee S, DeSancho, Maria T

Journal:

Orphanet Journal of Rare Diseases

Year:

2013

Language:

english

File:

PDF, 758 KB

english, 2013

3

DNMT3A mutations promote anthracycline resistance in acute myeloid leukemia via impaired nucleosome remodeling

Guryanova, Olga A, Shank, Kaitlyn, Spitzer, Barbara, Luciani, Luisa, Koche, Richard P, Garrett-Bakelman, Francine E, Ganzel, Chezi, Durham, Benjamin H, Mohanty, Abhinita, Hoermann, Gregor, Rivera, Sha

Journal:

Nature Medicine

Year:

2016

Language:

english

File:

PDF, 1.93 MB

english, 2016

4

Variational problems and elliptic Monge-Ampère equations

Bakelman, Ilya J.

Journal:

Journal Of Differential Geometry

Year:

1983

Language:

english

File:

PDF, 1.91 MB

english, 1983

5

The Potential Risk of Plant-Virus Disease Initiation by Infected Tomatoes

Klap, Chen, Luria, Neta, Smith, Elisheva, Bakelman, Elena, Belausov, Eduard, Laskar, Orly, Lachman, Oded, Gal-On, Amit, Dombrovsky, Aviv

Journal:

Year:

2020

File:

PDF, 5.40 MB

2020

6

The boundary value problems for non-linear elliptic equations and the maximum principle for Euler-Lagrange equations

Ilya J. Bakelman

Journal:

Archive for Rational Mechanics and Analysis

Year:

1986

Language:

english

File:

PDF, 1.11 MB

english, 1986

7

R-curvature, estimates and the stability of solutions of the Dirichlet problem for elliptic equations

Journal:

Journal of Differential Equations

Year:

1982

Language:

english

File:

PDF, 965 KB

english, 1982

8

Satb1 regulates the self-renewal of hematopoietic stem cells by promoting quiescence and repressing differentiation commitment

Will, Britta, Vogler, Thomas O, Bartholdy, Boris, Garrett-Bakelman, Francine, Mayer, Jillian, Barreyro, Laura, Pandolfi, Ashley, Todorova, Tihomira I, Okoye-Okafor, Ujunwa C, Stanley, Robert F, Bhagat

Journal:

Nature Immunology

Year:

2013

Language:

english

File:

PDF, 933 KB

english, 2013

9

An optimized algorithm for detecting and annotating regional differential methylation

Sheng Li, Francine E Garrett-Bakelman, Altuna Akalin, Paul Zumbo…

Journal:

BMC Bioinformatics

Year:

2013

Language:

english

File:

PDF, 525 KB

english, 2013

10

A Hybrid Mechanism of Action for BCL6 in B Cells Defined by Formation of Functionally Distinct Complexes at Enhancers and Promoters

Hatzi, Katerina, Jiang, Yanwen, Huang, Chuanxin, Garrett-Bakelman, Francine, Gearhart, Micah D., Giannopoulou, Eugenia G., Zumbo, Paul, Kirouac, Kevin, Bhaskara, Srividya, Polo, Jose M., Kormaksson, M

Journal:

Year:

2013

Language:

english

File:

PDF, 2.23 MB

english, 2013

11

[IEEE 2012 European Intelligence and Security Informatics Conference (EISIC) - Odense, Denmark (2012.08.22-2012.08.24)] 2012 European Intelligence and Security Informatics Conference - Developing a Keystroke Biometric System for Continual Authentication of Computer Users

Monaco, John V., Bakelman, Ned, Cha, Sung-Hyuk, Tappert, Charles C.

Year:

2012

Language:

english

File:

PDF, 312 KB

english, 2012

12

[IEEE 2013 European Intelligence and Security Informatics Conference (EISIC) - Uppsala, Sweden (2013.08.12-2013.08.14)] 2013 European Intelligence and Security Informatics Conference - Recent Advances in the Development of a Long-Text-Input Keystroke Biometric Authentication System for Arbitrary Text Input

Monaco, John V., Bakelman, Ned, Cha, Sung-Hyuk, Tappert, Charles C.

Year:

2013

Language:

english

File:

PDF, 696 KB

english, 2013

13

[IEEE 2013 European Intelligence and Security Informatics Conference (EISIC) - Uppsala, Sweden (2013.08.12-2013.08.14)] 2013 European Intelligence and Security Informatics Conference - Keystroke Biometric Studies on Password and Numeric Keypad Input

Bakelman, Ned, Monaco, John V., Cha, Sung-Hyuk, Tappert, Charles C.

Year:

2013

Language:

english

File:

PDF, 403 KB

english, 2013

14

Dynamic evolution of clonal epialleles revealed by methclone

Li, Sheng, Garrett-Bakelman, Francine, Perl, Alexander E, Luger, Selina M, Zhang, Chao, To, Bik L, Lewis, Ian D, Brown, Anna L, D’Andrea, Richard J, Ross, M Elizabeth, Levine, Ross, Carroll, Martin, M

Journal:

Year:

2014

Language:

english

File:

PDF, 1.44 MB

english, 2014

15

Base-Pair Resolution DNA Methylation Sequencing Reveals Profoundly Divergent Epigenetic Landscapes in Acute Myeloid Leukemia

Akalin, Altuna, Garrett-Bakelman, Francine E., Kormaksson, Matthias, Busuttil, Jennifer, Zhang, Lu, Khrebtukova, Irina, Milne, Thomas A., Huang, Yongsheng, Biswas, Debabrata, Hess, Jay L., Allis, C. D

Journal:

Year:

2012

Language:

english

File:

PDF, 1.29 MB

english, 2012

16

Differentiation therapy for IDH1/2 mutant malignancies

Garrett-Bakelman, Francine E, Melnick, Ari M

Journal:

Year:

2013

Language:

english

File:

PDF, 346 KB

english, 2013

17

Dnmt3a regulates myeloproliferation and liver-specific expansion of hematopoietic stem and progenitor cells

Guryanova, O A, Lieu, Y K, Garrett-Bakelman, F E, Spitzer, B, Glass, J L, Shank, K, Martinez, A B V, Rivera, S A, Durham, B H, Rapaport, F, Keller, M D, Pandey, S, Bastian, L, Tovbin, D, Weinstein, A

Journal:

Year:

2015

Language:

english

File:

PDF, 14.25 MB

english, 2015

18

Distinct evolution and dynamics of epigenetic and genetic heterogeneity in acute myeloid leukemia

Li, Sheng, Garrett-Bakelman, Francine E, Chung, Stephen S, Sanders, Mathijs A, Hricik, Todd, Rapaport, Franck, Patel, Jay, Dillon, Richard, Vijay, Priyanka, Brown, Anna L, Perl, Alexander E, Cannon, J

Journal:

Nature Medicine

Year:

2016

Language:

english

File:

PDF, 1.17 MB

english, 2016

19

Mutant IDH : a targetable driver of leukemic phenotypes linking metabolism, epigenetics and transcriptional regulation

Garrett-Bakelman, Francine E, Melnick, Ari M

Journal:

Year:

2016

Language:

english

File:

PDF, 1.07 MB

english, 2016

20

Improved Detection of Potato Leafroll Luteovirus in Leaves and Tubers with a Digoxigenin-Labeled cRNA Probe

Loebenstein, G., Akad, F., Filatov, V., Sadvakasova, G., Manadilova, A., Bakelman, H., Teverovsky, E., Lachmann, O., David, A.

Journal:

Year:

1997

Language:

english

File:

PDF, 155 KB

english, 1997

21

Aid is a key regulator of myeloid/erythroid differentiation and DNA methylation in hematopoietic stem/progenitor cells

Kunimoto, Hiroyoshi, McKenney, Anna Sophia, Meydan, Cem, Shank, Kaitlyn, Nazir, Abbas, Rapaport, Franck, Durham, Benjamin, Garrett-Bakelman, Francine E., Pronier, Elodie, Shih, Alan H., Melnick, Ari,

Journal:

Year:

2017

Language:

english

File:

PDF, 697 KB

english, 2017

22

CD99 is a therapeutic target on disease stem cells in myeloid malignancies

Chung, Stephen S., Eng, William S., Hu, Wenhuo, Khalaj, Mona, Garrett-Bakelman, Francine E., Tavakkoli, Montreh, Levine, Ross L., Carroll, Martin, Klimek, Virginia M., Melnick, Ari M., Park, Christoph

Journal:

Science Translational Medicine

Year:

2017

Language:

english

File:

PDF, 1.72 MB

english, 2017

23

Combination Targeted Therapy to Disrupt Aberrant Oncogenic Signaling and Reverse Epigenetic Dysfunction in IDH2 - and TET2 -Mutant Acute Myeloid Leukemia

Shih, Alan H., Meydan, Cem, Shank, Kaitlyn, Garrett-Bakelman, Francine E., Ward, Patrick S., Intlekofer, Andrew M., Nazir, Abbas, Stein, Eytan M., Knapp, Kristina, Glass, Jacob, Travins, Jeremy, Stral

Journal:

Cancer Discovery

Year:

2017

Language:

english

File:

PDF, 5.17 MB

english, 2017

24

Epigenetic Identity in AML Depends on Disruption of Non-promoter Regulatory Elements and is Affected by Antagonistic Effects of Mutations in Epigenetic Modifiers

Glass, Jacob, Hassane, Duane C., Wouters, Bas, Kunimoto, Hiroyoshi, Avellino, Roberto, Garrett-Bakelman, Francine E., Guryanova, Olga A., Bowman, Robert, Redlich, Shira, Intlekofer, Andrew, Meydan, Ce

Journal:

Cancer Discovery

Year:

2017

Language:

english

File:

PDF, 10.68 MB

english, 2017

25

Enhanced Reduced Representation Bisulfite Sequencing for Assessment of DNA Methylation at Base Pair Resolution

Garrett-Bakelman, Francine E., Sheridan, Caroline K., Kacmarczyk, Thadeous J., Ishii, Jennifer, Betel, Doron, Alonso, Alicia, Mason, Christopher E., Figueroa, Maria E., Melnick, Ari M.

Journal:

Journal of Visualized Experiments

Year:

2015

Language:

english

File:

PDF, 818 KB

english, 2015

26

Cooperative Epigenetic Remodeling by TET2 Loss and NRAS Mutation Drives Myeloid Transformation and MEK Inhibitor Sensitivity

Kunimoto, Hiroyoshi, Meydan, Cem, Nazir, Abbas, Whitfield, Justin, Shank, Kaitlyn, Rapaport, Franck, Maher, Rebecca, Pronier, Elodie, Meyer, Sara C., Garrett-Bakelman, Francine E., Tallman, Martin, Me

Journal:

Year:

2017

Language:

english

File:

PDF, 7.00 MB

english, 2017

27

Rational targeting of cooperating layers of the epigenome yields enhanced therapeutic efficacy against AML

Duy, Cihangir, Teater, Matt, Garrett-Bakelman, Francine E, Lee, Tak C., Meydan, Cem, Glass, Jacob L, Li, Meng, Hellmuth, Johannes C., Mohammad, Helai P, Smitheman, Kimberly N., Shih, Alan H., Abdel-Wa

Journal:

Cancer Discovery

Year:

2019

Language:

english

File:

PDF, 3.04 MB

english, 2019

28

CD97 is a critical regulator of acute myeloid leukemia stem cell function

Martin, Gaëlle H., Roy, Nainita, Chakraborty, Sohini, Desrichard, Alexis, Chung, Stephen S., Woolthuis, Carolien M., Hu, Wenhuo, Berezniuk, Iryna, Garrett-Bakelman, Francine E., Hamann, Jörg, Devlin,

Journal:

Journal of Experimental Medicine

Year:

2019

Language:

english

File:

PDF, 3.40 MB

english, 2019

29

1018 - CD97 IS A CRITICAL REGULATOR OF ACUTE MYELOID LEUKEMIA STEM CELL FUNCTION

Park, Christopher, Martin, Gaelle, Roy, Nainita, Chakraborty, Sohini, Desrichard, Alexis, chung, Stephen, Woolthuis, Carolien, Hu, Wenhuo, berezniuk, Iryna, Garrett-Bakelman, Francine, Hamann, Jorg, D

Journal:

Experimental Hematology

Year:

2019

Language:

english

File:

PDF, 38 KB

english, 2019

30

1018 - CD97 IS A CRITICAL REGULATOR OF ACUTE MYELOID LEUKEMIA STEM CELL FUNCTION

Park, Christopher, Martin, Gaelle, Roy, Nainita, Chakraborty, Sohini, Desrichard, Alexis, chung, Stephen, Woolthuis, Carolien, Hu, Wenhuo, berezniuk, Iryna, Garrett-Bakelman, Francine, Hamann, Jorg, D

Journal:

Experimental Hematology

Year:

2019

File:

PDF, 38 KB

2019

31

Tomato Brown Rugose Fruit Virus Contributes to Enhanced Pepino Mosaic Virus Titers in Tomato Plants

Klap, Chen, Luria, Neta, Smith, Elisheva, Hadad, Lior, Bakelman, Elena, Sela, Noa, Belausov, Eduard, Lachman, Oded, Leibman, Diana, Dombrovsky, Aviv

Journal:

Year:

2020

File:

PDF, 5.53 MB

2020

32

COCOA: coordinate covariation analysis of epigenetic heterogeneity

Lawson, John T., Smith, Jason P., Bekiranov, Stefan, Garrett-Bakelman, Francine E., Sheffield, Nathan C.

Journal:

Year:

2020

File:

PDF, 2.26 MB

2020